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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
154
ChIP-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
280
DNA accessibility
154
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
154
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
59
September, 2020
58
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
40
June, 2019
35
August, 2017
31
July, 2019
25
October, 2019
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
May, 2019
3
November, 2017
3
October, 2022
2
August, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
496
bam
491
bigWig
364
fastq
270
tsv
181
bed narrowPeak
153
zippedFastqFolder
73
bigBed narrowPeak
53
tagAlign
36
bed broadPeak
36
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
955
Homo sapiens
Biosample type
2351
tissue
955
primary cell
290
in vitro differentiated cells
282
cell line
9
stem cell
Organ
366
epithelium
315
pancreas
34
connective tissue
29
kidney
27
vasculature
23
blood vessel
16
vein
15
brain
12
liver
10
heart
10
musculature of body
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
474
AMP
324
HPAP
156
T1D
1
ITG
Genome assembly (visualization)
506
hg19
425
GRCh38
Lab
449
AMP-T2D consortium
324
Klaus Kaestner, Upenn
181
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
target.investigated_as!
transcription factor
narrow histone mark
month_released!
January, 2021
BIOSAMPLE
ASSAY
955 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
9
31
1
Langerhans cell
85
48
monocyte
54
15
44
1
1
pancreatic beta cell
21
23
12
9
16
1
exocrine cell
39
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