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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
265
ChIP-seq
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
285
DNA accessibility
265
DNA binding
57
DNA methylation
9
3D chromatin structure
Target of assay
234
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
49
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
592
bigWig
587
bam
404
fastq
279
bed narrowPeak
265
tsv
153
zippedFastqFolder
97
bigBed narrowPeak
96
tagAlign
42
bed broadPeak
42
bigBed broadPeak
31
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1064
Homo sapiens
Biosample type
2326
tissue
1064
primary cell
332
in vitro differentiated cells
197
cell line
10
stem cell
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
535
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
605
hg19
516
GRCh38
Lab
500
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
50
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
transcription factor
organ_slims!
liver
BIOSAMPLE
ASSAY
1064 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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