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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
DNase-seq
4
total RNA-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
21
DNA binding
6
DNA accessibility
4
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
transcription factor
Date released
21
October, 2019
7
June, 2019
5
July, 2019
1
March, 2020
Available data
31
bam
24
bigWig
18
bed narrowPeak
18
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
5
bed bed3+
4
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
34
Homo sapiens
Biosample type
301
tissue
62
cell line
34
primary cell
1
in vitro differentiated cells
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
34
AMP
Genome assembly (visualization)
26
hg19
21
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
1
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
17
2
2
1
cardiac fibroblast
4
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
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