Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
136
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
136
DNA binding
39
DNA accessibility
4
3D chromatin structure
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
45
August, 2017
40
August, 2021
39
February, 2018
26
February, 2021
20
December, 2017
12
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
108
fastq
100
bed narrowPeak
36
tagAlign
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
326
Homo sapiens
Biosample type
2456
tissue
1041
primary cell
326
in vitro differentiated cells
298
cell line
7
stem cell
Organ
68
connective tissue
23
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
326
AMP
Genome assembly (visualization)
241
hg19
215
GRCh38
4
hg18
Lab
286
AMP-T2D consortium
35
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
110
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
target.investigated_as!
transcription factor
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
326 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
44
5
7
1
embryonic stem cell
28
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
+ See 31 more…
See all biosamples
Download