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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
149
DNA binding
138
Transcription
42
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
116
May, 2021
45
August, 2017
42
August, 2021
39
February, 2018
32
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
108
fastq
100
bed narrowPeak
36
tagAlign
19
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
bed broadPeak
1
bigBed broadPeak
Organism
344
Homo sapiens
Biosample type
2470
tissue
1034
primary cell
344
in vitro differentiated cells
286
cell line
10
stem cell
Organ
74
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
344
AMP
Genome assembly (visualization)
259
hg19
227
GRCh38
4
hg18
Lab
302
AMP-T2D consortium
35
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
112
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
target.investigated_as!
transcription factor
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
344 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
45
5
8
1
cardiomyocytes
59
embryonic stem cell
28
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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