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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
55
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
55
DNA binding
6
DNA accessibility
6
DNA methylation
Target of assay
31
histone
31
histone modification
24
control
20
broad histone mark
transcription factor
11
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
470
Homo sapiens
Biosample type
468
tissue
2
primary cell
1
in vitro differentiated cells
Organ
906
pancreas
634
connective tissue
495
epithelium
471
adipose tissue
434
liver
346
heart
266
kidney
239
brain
212
vasculature
210
blood vessel
159
bone element
132
artery
86
limb
56
eye
50
musculature of body
41
nerve
34
embryo
20
lung
blood
18
bodily fluid
18
spleen
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
471
AMP
Genome assembly (visualization)
406
hg19
405
GRCh38
Lab
471
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
files.file_type!
bed broadPeak
organ_slims!
blood
BIOSAMPLE
ASSAY
471 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
1
omental fat pad
5
8
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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