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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
778
ChIP-seq
259
ATAC-seq
178
DNase-seq
106
total RNA-seq
85
RNA microarray
71
single cell RNA-seq
28
snATAC-seq
27
WGBS
16
Hi-C
11
RRBS
5
pCHi-C
4
FAIRE-seq
4
MeRIP-seq
Assay category
778
DNA binding
469
DNA accessibility
177
Transcription
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
309
narrow histone mark
283
broad histone mark
187
control
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
234
October, 2019
172
August, 2017
163
June, 2019
130
August, 2021
111
May, 2019
93
February, 2021
91
February, 2023
82
November, 2017
74
April, 2019
66
May, 2022
59
October, 2018
50
May, 2020
47
September, 2023
30
July, 2019
23
October, 2017
21
November, 2019
19
April, 2020
19
November, 2018
17
December, 2017
15
May, 2023
12
March, 2020
8
January, 2021
7
January, 2019
6
September, 2017
5
March, 2019
4
December, 2018
4
July, 2018
4
November, 2020
2
January, 2018
2
May, 2021
1
August, 2022
1
December, 2019
Available data
1818
bam
1644
bigWig
tsv
874
bed narrowPeak
496
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1563
Homo sapiens
Biosample type
1572
tissue
808
primary cell
214
in vitro differentiated cells
182
cell line
6
stem cell
Organ
286
kidney
242
brain
213
pancreas
168
liver
155
heart
116
blood vessel
116
vasculature
115
limb
100
bone element
75
musculature of body
73
connective tissue
72
adipose tissue
68
artery
51
eye
38
nerve
19
lung
18
spleen
18
ureter
16
skeleton
12
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
1475
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
814
GRCh38
749
hg19
Lab
1261
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
2
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
files.file_type!
tsv
BIOSAMPLE
ASSAY
1572 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
RNA microarray
single cell RNA-seq
snATAC-seq
WGBS
Hi-C
RRBS
pCHi-C
FAIRE-seq
MeRIP-seq
tissue
kidney
26
75
13
49
59
6
1
1
1
islet of Langerhans
64
67
1
31
7
3
1
4
1
4
liver
108
20
2
20
1
3
1
1
bone element
84
coronary artery
4
36
2
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