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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
ChIP-seq
177
DNase-seq
158
ATAC-seq
16
WGBS
1
total RNA-seq
Assay category
497
DNA binding
335
DNA accessibility
16
DNA methylation
1
Transcription
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
163
June, 2019
153
October, 2019
88
May, 2019
64
August, 2021
59
April, 2019
57
November, 2017
46
August, 2017
35
February, 2023
35
May, 2024
30
October, 2018
20
November, 2019
19
May, 2020
15
November, 2018
14
July, 2019
14
October, 2017
12
May, 2023
8
February, 2021
6
January, 2019
5
December, 2017
2
March, 2019
2
March, 2020
2
September, 2017
Available data
1619
bigWig
1615
bam
tsv
808
bed narrowPeak
490
bigBed narrowPeak
201
fastq
191
bed bed3+
191
bed broadPeak
176
bigBed broadPeak
116
tagAlign
64
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
tagAlign bed3+
Organism
843
Homo sapiens
Biosample type
849
tissue
275
primary cell
101
in vitro differentiated cells
51
cell line
3
stem cell
Organ
194
brain
166
heart
163
kidney
98
blood vessel
98
pancreas
98
vasculature
92
limb
61
artery
47
liver
38
musculature of body
27
nerve
18
ureter
10
spleen
9
adipose tissue
9
connective tissue
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
847
AMP
2
T1D
Genome assembly (visualization)
849
GRCh38
749
hg19
Lab
736
AMP-T2D consortium
75
Katalin Susztak, Upenn
35
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
7
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
files.file_type!
tsv
BIOSAMPLE
ASSAY
849 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
WGBS
total RNA-seq
tissue
kidney
20
13
75
islet of Langerhans
18
1
22
coronary artery
2
2
36
liver
38
2
left cardiac atrium
35
1
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