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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
49
total RNA-seq
32
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
82
DNA accessibility
57
Transcription
32
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
291
October, 2019
275
August, 2017
214
June, 2019
210
May, 2021
200
May, 2022
189
February, 2023
185
August, 2021
162
November, 2017
152
May, 2020
151
February, 2021
115
May, 2019
74
April, 2019
59
October, 2018
59
September, 2020
52
December, 2017
47
September, 2018
47
September, 2023
43
July, 2019
40
November, 2019
24
February, 2018
24
November, 2018
23
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
15
May, 2023
12
November, 2020
11
January, 2019
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
tsv
95
bed narrowPeak
64
xls
57
txt
49
bam
36
bigWig
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
184
Homo sapiens
Biosample type
130
tissue
35
in vitro differentiated cells
16
cell line
4
primary cell
Organ
130
kidney
15
liver
6
epithelium
5
connective tissue
3
pancreas
1
adipose tissue
Project
185
AMP
Genome assembly (visualization)
90
GRCh38
34
hg19
Lab
128
Katalin Susztak, Upenn
38
AMP-T2D consortium
15
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
transcription factor
files.file_type!
tsv
BIOSAMPLE
ASSAY
185 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
7
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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