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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
51
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
transcription factor
26
histone
26
histone modification
25
control
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
38
August, 2017
18
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
553
bam
530
bigWig
478
tsv
62
fastq
52
bed narrowPeak
22
bigBed narrowPeak
22
tagAlign
17
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
62
Homo sapiens
Biosample type
33
in vitro differentiated cells
26
tissue
3
primary cell
Organ
454
pancreas
253
epithelium
138
liver
62
connective tissue
27
adipose tissue
24
embryo
18
brain
18
spleen
9
blood
9
bodily fluid
4
vasculature
2
blood vessel
2
musculature of body
Project
62
AMP
Genome assembly (visualization)
36
GRCh38
34
hg19
Lab
62
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
31
1
white fat cell
1
tissue
subcutaneous adipose tissue
10
1
omental fat pad
8
1
1
adipose tissue
2
3
primary cell
pancreatic stellate cell
3
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