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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
304
ChIP-seq
Assay category
304
DNA binding
Target of assay
247
histone
247
histone modification
145
narrow histone mark
102
broad histone mark
57
control
transcription factor
Date released
86
May, 2021
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
24
August, 2021
14
October, 2017
3
February, 2021
Available data
2672
bam
2413
bigWig
1511
tsv
1195
bed narrowPeak
664
fastq
597
bigBed narrowPeak
304
tagAlign
240
bed bed3+
234
bed broadPeak
223
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
304
Homo sapiens
Biosample type
179
tissue
88
primary cell
22
in vitro differentiated cells
15
cell line
Organ
118
brain
66
liver
6
epithelium
2
artery
2
blood vessel
2
heart
2
pancreas
2
vasculature
1
pituitary gland
Project
220
AMP
84
T1D
Genome assembly (visualization)
220
GRCh38
191
hg19
Lab
220
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
month_released!
August, 2017
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
tissue
liver
50
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
brain
14
+ See 39 more…
primary cell
monocyte
84
hepatocyte
4
in vitro differentiated cells
neural progenitor cell
20
pancreatic PP cell
2
cell line
HepG2
12
smooth muscle cell of the coronary artery
2
iPSC derived cell line
1
See all biosamples
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