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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
321
ChIP-seq
Assay category
321
DNA binding
Target of assay
321
histone
321
histone modification
174
narrow histone mark
147
broad histone mark
control
transcription factor
Date released
85
May, 2021
74
August, 2017
67
November, 2017
40
October, 2019
27
May, 2020
16
August, 2021
12
October, 2017
Available data
2615
bigWig
2601
bam
1597
tsv
1313
bed narrowPeak
736
fastq
637
bigBed narrowPeak
321
tagAlign
273
bed broadPeak
245
bed bed3+
236
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
315
Homo sapiens
Biosample type
186
tissue
98
primary cell
26
in vitro differentiated cells
11
cell line
Organ
99
brain
58
liver
19
connective tissue
15
pancreas
13
musculature of body
7
adipose tissue
4
epithelium
1
pituitary gland
Project
237
AMP
84
T1D
Genome assembly (visualization)
237
GRCh38
227
hg19
Lab
237
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
transcription factor
control
BIOSAMPLE
ASSAY
321 results
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Clear Filters
ChIP-seq
tissue
liver
44
substantia nigra
14
caudate nucleus
13
layer of hippocampus
13
skeletal muscle tissue
13
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
11
hepatocyte
3
in vitro differentiated cells
neural progenitor cell
13
adipocyte
12
pancreatic PP cell
1
cell line
HepG2
11
See all biosamples
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