Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
ATAC-seq
21
snATAC-seq
Assay category
52
Transcription
41
DNA methylation
21
DNA accessibility
Date released
95
May, 2022
19
September, 2020
Available data
2732
bam
2502
bigWig
1586
tsv
1035
bed narrowPeak
843
fastq
610
bigBed narrowPeak
389
tagAlign
271
bed broadPeak
250
bed bed3+
236
bigBed broadPeak
158
txt
114
zippedFastqFolder
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
114
Homo sapiens
Biosample type
114
primary cell
Organ
41
epithelium
41
pancreas
Project
114
HPAP
Lab
114
Klaus Kaestner, Upenn
target.investigated_as!
transcription factor
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
114 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
snATAC-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
pancreatic beta cell
16
Download