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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
152
single cell RNA-seq
149
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
149
DNA binding
Target of assay
137
histone
137
histone modification
75
broad histone mark
62
narrow histone mark
transcription factor
12
control
6
RNA binding protein
Date released
142
May, 2021
7
August, 2021
Available data
120
bigWig
117
bed narrowPeak
84
bam
84
tagAlign
Organism
149
Homo sapiens
Biosample type
117
primary cell
25
in vitro differentiated cells
7
cell line
Organ
7
liver
Project
84
T1D
65
AMP
Genome assembly (visualization)
120
hg19
84
GRCh38
Lab
AMP-T2D consortium
142
Kyle Gaulton, UCSD
7
Bing Ren, UCSD
target.investigated_as!
transcription factor
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
149 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
in vitro differentiated cells
embryonic stem cell
25
cell line
HepG2
7
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