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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
30
ChIP-seq
Assay category
30
DNA binding
Target of assay
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
17
November, 2017
11
August, 2017
2
October, 2019
Available data
2698
bam
2459
bigWig
1600
tsv
1135
bed narrowPeak
892
fastq
428
bigBed narrowPeak
389
tagAlign
158
txt
153
zippedFastqFolder
67
bed broadPeak
64
xls
48
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
30
bigBed broadPeak
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
5
hdf5
4
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
30
Homo sapiens
Biosample type
16
primary cell
14
cell line
Organ
14
liver
4
epithelium
4
vasculature
3
blood vessel
3
brain
2
vein
Project
30
AMP
Genome assembly (visualization)
30
hg19
26
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
11
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
lab.title!
Struan F.A. Grant, CHOP
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
primary cell
skeletal muscle myoblast
11
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
cell line
HepG2
14
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