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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
7
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
Assay category
10
Transcription
7
DNA binding
3
3D chromatin structure
1
DNA accessibility
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
24
August, 2021
2
March, 2019
Available data
10
tsv
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
2
hic
1
bedpe
Organism
26
Homo sapiens
Biosample type
22
cell line
4
tissue
Organ
19
liver
4
pancreas
2
kidney
Project
26
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3426
AMP-T2D consortium
331
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
26
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
assay_slims!
DNA sequencing
BIOSAMPLE
ASSAY
26 results
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total RNA-seq
ChIP-seq
STARR-seq
Hi-C
ATAC-seq
cell line
HepG2
9
7
2
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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