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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
Transcription
7
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
15
August, 2021
2
March, 2019
Available data
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
17
Homo sapiens
Biosample type
14
cell line
3
tissue
Organ
11
liver
3
pancreas
2
kidney
Project
17
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
1950
AMP-T2D consortium
216
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
assay_slims!
Transcription
BIOSAMPLE
ASSAY
17 results
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ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
7
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
2
1
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