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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
single cell RNA-seq
10
total RNA-seq
7
ChIP-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
57
Transcription
7
DNA binding
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
47
September, 2023
25
August, 2021
2
March, 2019
Available data
10
tsv
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
74
Homo sapiens
Biosample type
51
tissue
23
cell line
Organ
49
kidney
20
liver
4
pancreas
Project
47
KPMP
27
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3426
AMP-T2D consortium
331
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
74 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
tissue
kidney
47
islet of Langerhans
1
2
1
cell line
HepG2
9
7
2
1
1
HEK293T
2
Synthesized DNA
1
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