Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
59
total RNA-seq
11
single cell RNA-seq
7
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
1
whole genome sequencing assay
Assay category
82
DNA accessibility
70
Transcription
7
DNA binding
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
153
August, 2021
14
May, 2023
2
March, 2019
Available data
67
bed narrowPeak
64
xls
57
txt
10
tsv
3
bigWig
3
hic
2
bedpe bed3+
1
bedpe
1
vcf
Organism
169
Homo sapiens
Biosample type
146
tissue
23
cell line
Organ
144
kidney
20
liver
4
pancreas
Project
169
AMP
Genome assembly (visualization)
76
GRCh38
7
hg19
Lab
3426
AMP-T2D consortium
331
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
27
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
169 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
whole genome sequencing assay
tissue
kidney
75
49
11
6
1
islet of Langerhans
1
1
2
cell line
HepG2
9
7
2
1
1
HEK293T
2
Synthesized DNA
1
Download