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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
3
ChIP-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
3
3D chromatin structure
3
DNA binding
1
DNA accessibility
1
DNA sequencing
Target of assay
transcription factor
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
21
August, 2021
2
March, 2019
Available data
10
tsv
3
bed narrowPeak
3
bigWig
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
23
Homo sapiens
Biosample type
19
cell line
4
tissue
Organ
16
liver
4
pancreas
2
kidney
Project
23
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
3100
AMP-T2D consortium
324
Klaus Kaestner, Upenn
323
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
23
Bing Ren, UCSD
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
control
BIOSAMPLE
ASSAY
23 results
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total RNA-seq
STARR-seq
ChIP-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
2
3
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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