Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
308
total RNA-seq
149
ATAC-seq
112
ChIP-seq
80
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
7
DNase-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
pCHi-C
Assay category
112
DNA binding
Target of assay
85
histone
85
histone modification
46
broad histone mark
39
narrow histone mark
27
control
transcription factor
7
RNA binding protein
Date released
August, 2017
41
October, 2018
32
September, 2018
13
October, 2019
12
November, 2019
6
September, 2017
3
March, 2020
3
May, 2021
2
May, 2019
Available data
112
bam
84
bed narrowPeak
84
bigWig
63
fastq
37
bigBed narrowPeak
2
bed bed3+
2
tagAlign
Organism
112
Homo sapiens
Biosample type
51
tissue
32
primary cell
27
cell line
2
in vitro differentiated cells
Organ
215
brain
170
liver
117
heart
112
pancreas
94
epithelium
93
vasculature
91
blood vessel
66
limb
42
kidney
35
nerve
30
connective tissue
29
artery
19
embryo
18
adipose tissue
17
musculature of body
17
vein
14
spleen
9
blood
9
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
108
AMP
4
T1D
Genome assembly (visualization)
86
GRCh38
86
hg19
Lab
112
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
1
inconsistent control read length
target.investigated_as!
transcription factor
month_released!
August, 2017
BIOSAMPLE
ASSAY
112 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
body of pancreas
26
endocrine pancreas
16
islet of Langerhans
8
pancreas
1
primary cell
pancreatic ductal cell
13
pancreatic endocrine cell
11
pancreatic acinar cell
8
cell line
EndoC_BH1
14
Panc1
13
in vitro differentiated cells
pancreatic PP cell
2
Download