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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ATAC-seq
23
total RNA-seq
4
ChIP-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
44
DNA accessibility
23
Transcription
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
transcription factor
Date released
39
February, 2023
21
October, 2019
8
February, 2021
6
June, 2019
1
February, 2020
1
July, 2019
Available data
40
bed narrowPeak
14
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
txt
1
bed bedMethyl
1
bigBed bedMethyl
Organism
76
Homo sapiens
Biosample type
72
tissue
4
primary cell
Organ
920
pancreas
644
connective tissue
508
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
76
AMP
Genome assembly (visualization)
45
hg19
13
GRCh38
Lab
76
AMP-T2D consortium
target.investigated_as!
transcription factor
month_released!
August, 2020
BIOSAMPLE
ASSAY
76 results
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ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
1
14
2
4
retina
15
3
3
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
ilium
1
1
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primary cell
retinal pigment epithelial cell
2
1
1
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