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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
ChIP-seq
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
418
Transcription
288
DNA accessibility
269
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
57
August, 2017
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
34
October, 2019
July, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
August, 2021
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
581
bam
581
bigWig
404
fastq
285
bed narrowPeak
252
tsv
153
zippedFastqFolder
100
tagAlign
99
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
33
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
1047
Homo sapiens
Biosample type
2606
tissue
1047
primary cell
345
in vitro differentiated cells
301
cell line
10
stem cell
Organ
388
epithelium
346
pancreas
30
connective tissue
30
vasculature
27
kidney
26
blood vessel
22
vein
12
liver
11
brain
11
musculature of body
8
blood
8
bodily fluid
7
heart
3
eye
1
bone element
1
bone marrow
Project
518
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
587
hg19
509
GRCh38
Lab
483
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
transcription factor
month_released!
July, 2019
BIOSAMPLE
ASSAY
1047 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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