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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
813
ChIP-seq
254
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
12
Hi-C
7
WGBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
2
RRBS
Assay category
1180
Transcription
813
DNA binding
462
DNA accessibility
12
3D chromatin structure
9
DNA methylation
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
256
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
74
April, 2019
66
May, 2022
July, 2019
59
October, 2018
47
September, 2023
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
25
February, 2020
23
October, 2017
19
April, 2020
17
December, 2017
15
May, 2023
13
November, 2018
8
January, 2021
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
December, 2018
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1754
bam
1616
bigWig
1029
tsv
902
bed narrowPeak
494
bigBed narrowPeak
298
fastq
238
tagAlign
213
bed broadPeak
192
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
11
bed bedMethyl
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2586
Homo sapiens
Biosample type
2595
tissue
1046
primary cell
345
in vitro differentiated cells
300
cell line
10
stem cell
Organ
518
connective tissue
478
pancreas
459
adipose tissue
313
liver
294
kidney
281
heart
254
brain
158
bone element
123
blood vessel
123
vasculature
117
limb
73
musculature of body
71
artery
56
eye
43
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2498
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1697
GRCh38
1604
hg19
Lab
2248
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
8
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
transcription factor
month_released!
July, 2019
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
2595 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
WGBS
MeRIP-seq
snDrop-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
298
64
68
1
7
4
3
4
1
adipose tissue
382
2
3
1
1
liver
165
108
20
2
1
1
1
3
kidney
49
26
75
13
64
6
1
bone element
84
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