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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
5
DNase-seq
Assay category
14
DNA binding
5
DNA accessibility
Target of assay
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
14
November, 2017
3
November, 2018
2
June, 2019
Available data
348
bam
281
bigWig
167
tsv
138
fastq
112
bed narrowPeak
86
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
10
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
csv
1
vcf
Organism
19
Homo sapiens
Biosample type
14
cell line
3
tissue
2
primary cell
Organ
78
kidney
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
19
liver
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
19
AMP
Genome assembly (visualization)
19
hg19
17
GRCh38
Lab
19
AMP-T2D consortium
Audit category:
11
inconsistent control read length
target.investigated_as!
transcription factor
month_released!
July, 2019
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
DNase-seq
cell line
HepG2
14
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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