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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
56
total RNA-seq
44
ATAC-seq
9
DNase-seq
6
single cell RNA-seq
3
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
66
DNA binding
62
Transcription
54
DNA accessibility
3
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
narrow histone mark
21
control
transcription factor
4
RNA binding protein
Date released
62
February, 2021
37
October, 2019
35
February, 2023
33
May, 2019
July, 2019
6
August, 2021
5
June, 2019
4
March, 2020
3
February, 2020
1
November, 2017
Available data
138
bam
108
bigWig
95
bed narrowPeak
63
tsv
51
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
hic
2
bedpe bed3+
2
tagAlign
1
fastq
1
tar
Organism
186
Homo sapiens
Biosample type
105
tissue
62
cell line
19
primary cell
Organ
848
pancreas
593
connective tissue
453
epithelium
450
adipose tissue
383
liver
318
kidney
311
heart
189
vasculature
186
blood vessel
159
bone element
148
brain
127
artery
102
limb
73
musculature of body
56
eye
35
nerve
26
embryo
20
lung
18
ureter
17
blood
17
bodily fluid
17
spleen
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
186
AMP
Genome assembly (visualization)
147
GRCh38
118
hg19
Lab
186
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
transcription factor
narrow histone mark
month_released!
July, 2019
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
2
1
35
2
tibial artery
19
1
1
2
aorta
9
1
4
1
1
ascending aorta
11
1
1
thoracic aorta
11
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
2
52
8
primary cell
endothelial cell of umbilical vein
11
2
2
1
brain microvascular endothelial cell
1
1
kidney capillary endothelial cell
1
See all biosamples
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