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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
20
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
20
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
11
narrow histone mark
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
707
February, 2021
374
May, 2021
318
May, 2020
314
August, 2017
296
August, 2021
268
October, 2019
206
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
92
May, 2019
91
November, 2017
73
September, 2018
64
March, 2020
60
April, 2019
59
September, 2020
58
November, 2019
49
April, 2018
47
September, 2023
35
May, 2024
October, 2018
31
December, 2017
31
February, 2018
25
February, 2020
20
October, 2017
19
April, 2020
18
November, 2018
16
January, 2021
15
May, 2023
12
January, 2019
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
December, 2018
3
June, 2018
1
August, 2022
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
41
bam
36
bigWig
16
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
295
Homo sapiens
Biosample type
229
tissue
35
in vitro differentiated cells
29
cell line
3
primary cell
Organ
130
kidney
92
heart
19
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
296
AMP
Genome assembly (visualization)
105
GRCh38
49
hg19
Lab
143
AMP-T2D consortium
128
Katalin Susztak, Upenn
21
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
transcription factor
control
month_released!
October, 2018
BIOSAMPLE
ASSAY
296 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
9
3
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
3
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