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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
189
total RNA-seq
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
214
DNA binding
193
Transcription
7
DNA methylation
6
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
49
August, 2017
30
December, 2017
24
August, 2021
20
May, 2022
10
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
352
bam
268
bigWig
174
tsv
137
fastq
89
bed narrowPeak
86
tagAlign
43
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
430
Homo sapiens
Biosample type
301
tissue
103
cell line
13
in vitro differentiated cells
13
primary cell
Organ
732
pancreas
601
connective tissue
450
adipose tissue
430
liver
410
epithelium
329
heart
279
brain
269
kidney
181
vasculature
176
blood vessel
147
bone element
114
limb
95
musculature of body
91
artery
42
nerve
34
embryo
32
eye
22
vein
20
lung
18
spleen
18
ureter
17
blood
17
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
430
AMP
Genome assembly (visualization)
273
hg19
242
GRCh38
Lab
390
AMP-T2D consortium
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
target.investigated_as!
transcription factor
month_released!
October, 2018
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
430 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
108
167
2
3
1
1
1
1
1
right lobe of liver
8
3
2
1
2
cell line
HepG2
81
14
1
2
2
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
5
1
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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