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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ChIP-seq
5
MeRIP-seq
Assay category
37
DNA binding
Target of assay
121
histone
121
histone modification
62
narrow histone mark
59
broad histone mark
42
control
transcription factor
5
nucleotide modification
3
RNA binding protein
Date released
21
August, 2017
October, 2018
6
October, 2019
6
September, 2017
5
November, 2020
2
November, 2019
1
May, 2019
1
May, 2021
Available data
31
bam
21
fastq
3
tagAlign
2
bed bed3+
Organism
41
Homo sapiens
Biosample type
18
tissue
12
primary cell
11
cell line
1
in vitro differentiated cells
Organ
108
liver
42
pancreas
31
brain
30
epithelium
22
vasculature
21
blood vessel
20
heart
17
connective tissue
17
limb
12
kidney
11
nerve
9
artery
8
spleen
7
embryo
6
adipose tissue
6
blood
6
bodily fluid
6
musculature of body
2
vein
1
eye
Project
42
AMP
Genome assembly (visualization)
2
GRCh38
2
hg19
Lab
37
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
5
inconsistent ontology term
target.investigated_as!
transcription factor
month_released!
October, 2018
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
MeRIP-seq
tissue
islet of Langerhans
13
2
pancreas
2
body of pancreas
1
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
cell line
Panc1
6
EndoC_BH1
2
3
in vitro differentiated cells
pancreatic PP cell
1
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