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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
20
total RNA-seq
12
ChIP-seq
3
single cell RNA-seq
2
Hi-C
1
pCHi-C
Assay category
26
DNA accessibility
23
Transcription
12
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
transcription factor
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
61
bam
36
bed narrowPeak
33
bigWig
23
tsv
4
fastq
3
bedpe bed3+
2
hic
Organism
64
Homo sapiens
Biosample type
40
tissue
15
cell line
6
in vitro differentiated cells
3
primary cell
Organ
57
pancreas
18
epithelium
2
adipose tissue
2
connective tissue
Project
64
AMP
Genome assembly (visualization)
61
hg19
59
GRCh38
Lab
64
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
12
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
white fat cell
1
primary cell
pancreatic alpha cell
2
pancreatic acinar cell
1
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