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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ATAC-seq
20
total RNA-seq
18
ChIP-seq
3
Hi-C
Assay category
26
DNA accessibility
20
Transcription
18
DNA binding
3
3D chromatin structure
Target of assay
transcription factor
10
histone
10
histone modification
6
broad histone mark
6
control
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
64
bam
38
bed narrowPeak
32
bigWig
20
tsv
7
fastq
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
Organism
67
Homo sapiens
Biosample type
44
tissue
18
cell line
5
in vitro differentiated cells
Organ
54
pancreas
15
epithelium
4
spleen
2
blood
2
bodily fluid
1
adipose tissue
1
connective tissue
1
liver
Project
67
AMP
Genome assembly (visualization)
60
hg19
58
GRCh38
Lab
67
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
67 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
tissue
islet of Langerhans
19
19
1
spleen
4
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
12
1
GM12878
2
HepG2
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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