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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ATAC-seq
20
total RNA-seq
12
ChIP-seq
3
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
25
DNA accessibility
24
Transcription
12
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
transcription factor
Date released
383
May, 2021
341
May, 2020
324
February, 2021
319
August, 2017
307
August, 2021
306
October, 2019
213
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
96
July, 2019
74
April, 2019
73
September, 2018
63
March, 2020
59
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
43
October, 2018
39
February, 2018
35
May, 2024
23
February, 2020
23
November, 2018
22
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
December, 2018
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
57
bam
35
bed narrowPeak
30
bigWig
20
tsv
3
hic
2
bedpe bed3+
Organism
60
Homo sapiens
Biosample type
39
tissue
17
cell line
5
in vitro differentiated cells
2
stem cell
1
primary cell
Organ
54
pancreas
15
epithelium
adipose tissue
1
connective tissue
Project
59
AMP
4
community
1
ITG
Genome assembly (visualization)
57
hg19
56
GRCh38
Lab
59
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
20
inconsistent ontology term
target.investigated_as!
transcription factor
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
64 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
tissue
islet of Langerhans
19
19
1
cell line
EndoC_BH1
1
1
12
1
EndoC-BH1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
stem cell
SB Ad3.1
1
1
primary cell
chondrocytes
1
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