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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
24
total RNA-seq
10
MeRIP-seq
8
ChIP-seq
2
Hi-C
1
DNase-seq
Assay category
28
DNA accessibility
24
Transcription
8
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
7
control
6
broad histone mark
5
nucleotide modification
narrow histone mark
1
RNA binding protein
transcription factor
Date released
710
February, 2021
319
May, 2021
314
May, 2020
297
August, 2021
276
August, 2017
205
February, 2023
203
June, 2019
200
May, 2022
168
July, 2018
166
October, 2019
124
November, 2017
108
July, 2019
81
May, 2019
61
March, 2020
59
September, 2020
58
September, 2018
56
November, 2019
51
April, 2019
50
October, 2018
49
April, 2018
47
September, 2023
36
December, 2017
31
February, 2018
25
February, 2020
24
November, 2018
21
October, 2017
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
January, 2019
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
60
bam
34
bed narrowPeak
31
bigWig
24
tsv
2
bedpe bed3+
2
hic
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
72
Homo sapiens
Biosample type
44
tissue
17
cell line
6
primary cell
5
in vitro differentiated cells
Organ
60
pancreas
17
epithelium
7
connective tissue
1
adipose tissue
Project
72
AMP
Genome assembly (visualization)
60
hg19
58
GRCh38
Lab
62
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
23
inconsistent ontology term
target.investigated_as!
transcription factor
narrow histone mark
BIOSAMPLE
ASSAY
72 results
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Clear Filters
ATAC-seq
total RNA-seq
MeRIP-seq
ChIP-seq
Hi-C
DNase-seq
tissue
islet of Langerhans
19
19
4
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
6
8
1
primary cell
osteoblast
1
4
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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