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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
27
ChIP-seq
20
total RNA-seq
2
Hi-C
Assay category
34
DNA accessibility
27
DNA binding
20
Transcription
2
3D chromatin structure
Target of assay
22
histone
22
histone modification
16
broad histone mark
6
narrow histone mark
5
control
1
RNA binding protein
transcription factor
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
64
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
73
bam
48
bed narrowPeak
44
bigWig
20
tsv
17
fastq
14
tagAlign
6
bigBed narrowPeak
4
bed broadPeak
2
bedpe bed3+
2
hic
Organism
83
Homo sapiens
Biosample type
63
tissue
15
cell line
5
in vitro differentiated cells
Organ
59
pancreas
16
brain
15
epithelium
2
adipose tissue
2
connective tissue
1
spleen
Project
83
AMP
Genome assembly (visualization)
71
hg19
70
GRCh38
Lab
82
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
21
inconsistent ontology term
Audit category:
4
missing controlled_by
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
83 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
20
19
1
brain
15
body of pancreas
4
adipose tissue(adipose white tissue)
1
cerebellum (Hemisphere)
1
+ See 2 more…
cell line
EndoC_BH1
1
12
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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