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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
16
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
91
February, 2021
74
November, 2017
33
August, 2021
23
October, 2019
21
May, 2021
15
November, 2019
11
March, 2020
9
January, 2019
6
February, 2023
6
November, 2020
4
November, 2018
3
December, 2018
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
22
bam
13
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
23
Homo sapiens
Biosample type
242
tissue
34
primary cell
23
cell line
8
in vitro differentiated cells
Organ
15
pancreas
8
kidney
2
epithelium
Project
23
AMP
Genome assembly (visualization)
13
GRCh38
13
hg19
Lab
23
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
13
1
1
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
RCC 7860 vector
1
1
glomerular visceral epithelial cell
1
1
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