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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
20
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
20
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
60
February, 2021
35
February, 2023
21
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
May, 2019
Available data
88
bam
80
bigWig
69
bed narrowPeak
58
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
127
Homo sapiens
Biosample type
65
tissue
60
cell line
2
primary cell
Organ
874
pancreas
609
connective tissue
485
epithelium
450
adipose tissue
356
heart
345
liver
332
kidney
252
brain
205
vasculature
201
blood vessel
159
bone element
127
artery
105
limb
90
musculature of body
59
eye
32
nerve
embryo
20
lung
20
vein
18
ureter
16
skeleton
12
blood
12
bodily fluid
11
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
127
AMP-T2D consortium
target.investigated_as!
transcription factor
control
organ_slims!
embryo
BIOSAMPLE
ASSAY
127 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
2
tibial artery
1
1
18
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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