Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
51
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
51
DNA binding
Target of assay
51
histone
51
histone modification
28
broad histone mark
23
narrow histone mark
5
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
39
August, 2017
9
November, 2017
9
October, 2019
6
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2552
bam
2349
bigWig
1426
tsv
1201
bed narrowPeak
766
fastq
593
bigBed narrowPeak
303
tagAlign
254
bed broadPeak
243
bed bed3+
217
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
248
Homo sapiens
Biosample type
210
tissue
42
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
44
brain
36
limb
30
heart
21
pancreas
20
epithelium
liver
18
ureter
15
vasculature
12
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
254
AMP
Genome assembly (visualization)
230
hg19
229
GRCh38
Lab
252
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
target.investigated_as!
transcription factor
organ_slims!
liver
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 43 more…
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download