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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
42
ChIP-seq
2
ATAC-seq
Assay category
203
DNA accessibility
42
DNA binding
Target of assay
42
histone
42
histone modification
26
broad histone mark
16
narrow histone mark
2
RNA binding protein
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
39
August, 2017
November, 2017
9
October, 2019
6
November, 2018
4
October, 2017
1
March, 2019
1
November, 2020
Available data
2477
bam
2321
bigWig
1426
tsv
1175
bed narrowPeak
760
fastq
533
bigBed narrowPeak
245
bed broadPeak
243
bed bed3+
237
tagAlign
214
bigBed broadPeak
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
239
Homo sapiens
Biosample type
204
tissue
39
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
46
musculature of body
36
limb
35
brain
30
heart
21
pancreas
18
epithelium
18
ureter
13
vasculature
11
blood vessel
10
connective tissue
liver
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
245
AMP
Genome assembly (visualization)
221
GRCh38
221
hg19
Lab
243
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
2
inconsistent assembly
target.investigated_as!
transcription factor
organ_slims!
liver
month_released!
November, 2017
BIOSAMPLE
ASSAY
245 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 40 more…
primary cell
skeletal muscle myoblast
1
11
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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