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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
ChIP-seq
26
ATAC-seq
22
total RNA-seq
2
Hi-C
Assay category
71
DNA binding
26
DNA accessibility
22
Transcription
2
3D chromatin structure
Target of assay
40
histone
40
histone modification
31
control
25
broad histone mark
transcription factor
15
narrow histone mark
12
RNA binding protein
Date released
710
February, 2021
383
May, 2021
364
August, 2017
341
May, 2020
308
August, 2021
307
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
162
November, 2017
115
May, 2019
108
July, 2019
74
April, 2019
73
September, 2018
63
March, 2020
61
October, 2018
60
November, 2019
59
September, 2020
52
December, 2017
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
16
January, 2019
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
119
bam
66
bed narrowPeak
62
bigWig
45
fastq
30
bigBed narrowPeak
22
tsv
2
bedpe bed3+
2
hic
Organism
121
Homo sapiens
Biosample type
99
tissue
15
cell line
5
in vitro differentiated cells
2
primary cell
Organ
97
pancreas
19
adipose tissue
19
connective tissue
17
epithelium
Project
121
AMP
Genome assembly (visualization)
90
hg19
88
GRCh38
Lab
121
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
transcription factor
organ_slims!
lung
BIOSAMPLE
ASSAY
121 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
body of pancreas
24
endocrine pancreas
16
subcutaneous adipose tissue
10
omental fat pad
8
+ See 2 more…
cell line
EndoC_BH1
12
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic acinar cell
2
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