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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
56
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
56
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
44
August, 2017
18
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
422
bam
404
bigWig
401
tsv
25
fastq
8
tagAlign
4
bed narrowPeak
3
bed broadPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
467
Homo sapiens
Biosample type
465
tissue
2
primary cell
1
in vitro differentiated cells
Organ
775
pancreas
619
connective tissue
468
adipose tissue
430
liver
412
epithelium
294
heart
279
brain
269
kidney
181
vasculature
176
blood vessel
147
bone element
114
limb
95
musculature of body
91
artery
42
nerve
34
embryo
32
eye
22
vein
20
lung
18
spleen
18
ureter
17
blood
17
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
468
AMP
Genome assembly (visualization)
404
GRCh38
403
hg19
Lab
468
AMP-T2D consortium
target.investigated_as!
transcription factor
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
468 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
1
2
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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