Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
20
ChIP-seq
3
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
20
DNA binding
5
DNA accessibility
2
DNA methylation
Target of assay
19
control
transcription factor
5
RNA binding protein
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
18
October, 2018
12
July, 2019
5
August, 2017
1
June, 2019
1
November, 2018
1
November, 2019
1
October, 2017
Available data
425
bam
408
bigWig
401
tsv
27
fastq
8
bed narrowPeak
8
tagAlign
5
bigBed narrowPeak
3
bed broadPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
425
Homo sapiens
Biosample type
423
tissue
2
primary cell
Organ
645
pancreas
553
connective tissue
425
adipose tissue
355
liver
308
epithelium
240
brain
199
heart
176
vasculature
172
blood vessel
134
kidney
114
limb
97
artery
66
bone element
57
musculature of body
42
nerve
33
embryo
20
vein
18
spleen
18
ureter
9
blood
9
bodily fluid
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
425
AMP
Genome assembly (visualization)
406
GRCh38
404
hg19
Lab
425
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
425 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
2
2
subcutaneous adipose tissue
6
10
1
1
omental fat pad
4
8
1
1
2
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
Download