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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
ChIP-seq
45
ATAC-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
52
DNA accessibility
2
3D chromatin structure
Date released
60
February, 2021
35
February, 2023
7
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
71
bam
63
bigWig
58
tsv
52
bed narrowPeak
7
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
112
Homo sapiens
Biosample type
60
cell line
45
tissue
7
primary cell
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
105
GRCh38
73
hg19
Lab
112
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
transcription factor
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
8
tissue
coronary artery
1
36
2
tibial artery
1
1
2
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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