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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
9
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
9
DNA binding
Target of assay
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
8
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
May, 2019
Available data
77
bam
60
bigWig
58
tsv
49
bed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
tagAlign
Organism
116
Homo sapiens
Biosample type
62
cell line
52
tissue
2
primary cell
Organ
776
pancreas
566
connective tissue
442
adipose tissue
422
epithelium
351
liver
314
kidney
279
heart
159
bone element
156
vasculature
152
blood vessel
116
artery
96
brain
73
limb
63
musculature of body
57
eye
22
embryo
lung
19
nerve
18
ureter
17
blood
17
bodily fluid
16
skeleton
13
spleen
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
116
AMP
Genome assembly (visualization)
103
GRCh38
68
hg19
Lab
116
AMP-T2D consortium
target.investigated_as!
transcription factor
histone
organ_slims!
lung
BIOSAMPLE
ASSAY
116 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
2
tissue
coronary artery
1
36
2
2
tibial artery
1
1
5
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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