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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
29
ChIP-seq
10
ATAC-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
29
DNA binding
14
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
transcription factor
1
RNA binding protein
Date released
62
February, 2021
February, 2023
26
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
97
bam
80
bigWig
58
tsv
34
bed narrowPeak
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
101
Homo sapiens
Biosample type
62
cell line
37
tissue
2
primary cell
Organ
871
pancreas
630
connective tissue
473
adipose tissue
463
epithelium
453
liver
344
kidney
340
heart
282
brain
192
vasculature
187
blood vessel
151
bone element
122
limb
101
artery
96
musculature of body
43
nerve
34
embryo
29
eye
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
101
AMP
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
101
AMP-T2D consortium
target.investigated_as!
transcription factor
organ_slims!
ureter
month_released!
February, 2023
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
2
8
tissue
tibial artery
1
23
1
2
coronary artery
1
4
1
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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