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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
33
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
49
DNA accessibility
33
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
transcription factor
1
RNA binding protein
Date released
62
February, 2021
35
February, 2023
30
October, 2019
4
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
97
bam
80
bigWig
69
bed narrowPeak
59
tsv
24
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
tagAlign
Organism
141
Homo sapiens
Biosample type
77
tissue
62
cell line
2
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
141
AMP
Genome assembly (visualization)
123
GRCh38
88
hg19
Lab
141
AMP-T2D consortium
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
141 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
4
2
tibial artery
1
1
23
2
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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