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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
4
DNase-seq
4
Hi-C
2
total RNA-seq
1
FAIRE-seq
Assay category
19
DNA binding
5
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
16
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
3
control
1
RNA binding protein
transcription factor
Date released
21
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
26
bam
23
bigWig
16
bed narrowPeak
16
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3+
2
fastq
2
hdf5
2
hic
2
tsv
1
bedpe bed3+
1
tar
Organism
30
Homo sapiens
Biosample type
130
tissue
62
cell line
30
primary cell
Organ
401
epithelium
346
pancreas
38
connective tissue
35
vasculature
34
kidney
30
blood vessel
22
vein
18
brain
14
liver
14
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
30
AMP
Genome assembly (visualization)
24
hg19
17
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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