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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
13
ATAC-seq
9
ChIP-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
21
DNA accessibility
9
DNA binding
Target of assay
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
8
February, 2023
8
January, 2021
4
January, 2019
3
November, 2018
2
December, 2018
1
January, 2018
1
May, 2021
Available data
88
txt
75
bam
62
bigWig
58
tsv
11
bed narrowPeak
9
fastq
4
bed bed3
3
bigBed narrowPeak
Organism
177
Homo sapiens
Biosample type
158
tissue
10
cell line
9
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
344
kidney
341
heart
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
9
T1D
Genome assembly (visualization)
74
hg19
69
GRCh38
Lab
168
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
177 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
1
9
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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