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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
2
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
14
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
January, 2019
6
November, 2018
4
December, 2018
1
March, 2020
1
May, 2021
1
October, 2017
Available data
18
bam
18
fastq
10
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
20
Homo sapiens
Biosample type
19
tissue
1
primary cell
Organ
927
pancreas
644
connective tissue
515
epithelium
474
adipose tissue
453
liver
376
heart
344
kidney
283
brain
227
vasculature
222
blood vessel
159
bone element
136
artery
122
limb
96
musculature of body
60
eye
43
nerve
34
embryo
22
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
19
AMP
1
T1D
Genome assembly (visualization)
10
GRCh38
8
hg19
Lab
19
AMP-T2D consortium
1
Kyle Gaulton, UCSD
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
WGBS
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
14
2
1
1
1
primary cell
megakaryocyte
1
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