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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
102
ChIP-seq
ATAC-seq
6
WGBS
3
DNase-seq
3
pCHi-C
2
Capture-C
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
102
DNA binding
6
DNA methylation
3
DNA accessibility
Target of assay
70
histone
70
histone modification
40
broad histone mark
transcription factor
32
control
29
narrow histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
448
February, 2021
90
August, 2017
18
October, 2018
10
July, 2019
4
February, 2023
3
August, 2021
2
February, 2020
2
March, 2020
1
August, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
October, 2019
Available data
515
bam
491
bigWig
463
tsv
57
fastq
30
bed narrowPeak
22
tagAlign
5
bed bed3+
4
bed broadPeak
4
bigBed narrowPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
582
Homo sapiens
Biosample type
524
tissue
58
in vitro differentiated cells
primary cell
1
stem cell
Organ
583
connective tissue
500
pancreas
466
adipose tissue
417
liver
317
heart
261
brain
235
kidney
146
blood vessel
146
bone element
146
vasculature
114
limb
89
artery
83
epithelium
81
musculature of body
42
nerve
34
embryo
28
eye
20
lung
18
spleen
18
ureter
9
blood
9
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
583
AMP
Genome assembly (visualization)
493
hg19
492
GRCh38
Lab
581
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
transcription factor
biosample_type!
primary cell
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
583 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
Capture-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
bone tissue
58
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
10
1
1
omental fat pad
5
8
2
1
+ See 2 more…
in vitro differentiated cells
adipocyte
5
45
1
1
immature adipocyte
2
cardiac fibroblast
1
osteoblast
1
preadipocyte
1
+ See 1 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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