Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
46
ChIP-seq
17
ATAC-seq
2
Capture-C
1
DNase-seq
1
pCHi-C
Assay category
67
Transcription
46
DNA binding
18
DNA accessibility
Target of assay
38
histone
38
histone modification
transcription factor
20
broad histone mark
17
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
66
February, 2021
46
August, 2017
13
February, 2023
4
August, 2021
3
October, 2019
1
March, 2020
1
May, 2021
Available data
95
bam
93
bigWig
64
tsv
32
fastq
28
bed narrowPeak
14
tagAlign
7
bed bed3+
5
bed bed3
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
1
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
74
in vitro differentiated cells
59
tissue
primary cell
1
stem cell
Organ
606
connective tissue
581
pancreas
adipose tissue
439
liver
364
heart
310
kidney
265
brain
192
blood vessel
192
vasculature
158
bone element
134
artery
122
limb
114
epithelium
82
musculature of body
56
eye
43
nerve
34
embryo
20
lung
19
spleen
18
ureter
16
skeleton
10
blood
10
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
109
hg19
90
GRCh38
Lab
130
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
target.investigated_as!
transcription factor
biosample_type!
primary cell
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
134 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Capture-C
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
5
45
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
tissue
bone tissue
58
islet of Langerhans
1
stem cell
mesenchymal stem cell
1
See all biosamples
Download